viewitems.py 12.5 KB
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# -*- coding: utf-8 -*-
"""
GEPARD - Gepard-Enabled PARticle Detection
Copyright (C) 2018  Lars Bittrich and Josef Brandt, Leibniz-Institut für 
Polymerforschung Dresden e. V. <bittrich-lars@ipfdd.de>    

This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program, see COPYING.  
If not, see <https://www.gnu.org/licenses/>.
"""
import numpy as np
from PyQt5 import QtCore, QtWidgets, QtGui

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class SegmentationContours(QtWidgets.QGraphicsItem):
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    def __init__(self, parent, contours=[], pos=(0,0)):
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        super().__init__()
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        self.parent = parent
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        self.setPos(pos[0], pos[1])
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        self.setFlag(QtWidgets.QGraphicsItem.ItemIsSelectable)
        self.setAcceptedMouseButtons(QtCore.Qt.AllButtons)
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        self.brect = QtCore.QRectF(0,0,1,1)
        self.resetContours(contours)
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        self.colorList = []
        self.selectedContours = []
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    def boundingRect(self):
        return self.brect
    
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    def resetContours(self, contours=[]):
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        cp = []
        x0 = None
        for c in contours:
            polygon = QtGui.QPolygonF()
            if x0 is None:
                x0 = c[:,0,0].min()
                x1 = c[:,0,0].max()
                y0 = c[:,0,1].min()
                y1 = c[:,0,1].max()
            else:
                x0 = min(x0, c[:,0,0].min())
                x1 = max(x1, c[:,0,0].max())
                y0 = min(y0, c[:,0,1].min())
                y1 = max(y1, c[:,0,1].max())
            for ci in c:
                polygon.append(QtCore.QPointF(ci[0,0],ci[0,1]))
            cp.append(polygon)
        if x0 is None:
            self.brect = QtCore.QRectF(0,0,1,1)
        else:
            self.brect.setCoords(x0,y0,x1,y1)
        self.contours = cp
        self.update()
    
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    def paint(self, painter, option, widget):           
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        painter.setPen(QtCore.Qt.green)
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        lenColorList = len(self.colorList)
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        if self.parent.analysiswidget is not None:
            nonePaintMode = self.parent.analysiswidget.noOverlayAct.isChecked()
        else:
            nonePaintMode = False
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        for index, c in enumerate(self.contours):
            if index not in self.selectedContours:
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                if lenColorList > 0:
                    color = self.colorList[index]
                    painter.setPen(QtGui.QColor(int(color.red()*0.7), int(color.green()*0.7), int(color.blue()*0.7), color.alpha()))
                else:
                    color = QtCore.Qt.green
                    painter.setPen(color)
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                if not nonePaintMode:
                    painter.setBrush(color)
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                painter.drawPolygon(c)
            else:
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                if lenColorList > 0:
                    alpha = self.colorList[index].alpha()
                else:
                    alpha = 255
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                if not nonePaintMode:
                    painter.setBrush(QtGui.QColor(200, 200, 200, alpha))
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                painter.setPen(QtCore.Qt.white)
                painter.drawPolygon(c)
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    def mousePressEvent(self, event):            
        if event.button()==QtCore.Qt.LeftButton:
            p = event.pos()
            p = QtCore.QPointF(p.x(), p.y())
            for index, cnt in enumerate(self.contours):
                if cnt.containsPoint(p, QtCore.Qt.OddEvenFill):
                     
                    if event.modifiers()==QtCore.Qt.ShiftModifier:
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                        if index not in self.selectedContours:
                            self.selectedContours.append(index)
                        else:
                            self.selectedContours.remove(index)
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                    else:
                        self.selectedContours = [index]
                        
                    self.parent.selectContour(index, centerOn=False)
                    
                    self.update()
                    return
            self.selectedContours = []   #reset selection, if nothing was hit...
            self.update()
    
    def contextMenuEvent(self, event):
        contextMenu = QtWidgets.QMenu("Particle options")

        combineMenu = QtWidgets.QMenu("Combine Particles into")
        
        combineActs = []
        assignments = []
        for index in self.selectedContours:
#            partIndex = int(np.where(self.parent.dataset.ramanscansortindex == index)[0])
            partIndex = index
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            assignments.append(self.analysiswidget.datastats.particleResults[partIndex])
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        assignments.append("other")
        for assignment in np.unique(np.array(assignments)):
            combineActs.append(combineMenu.addAction(assignment))
        
        reassignActs = []
        reassignMenu = QtWidgets.QMenu("Reassign particle(s) into")
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        for polymer in self.analysiswidget.datastats.getUniquePolymers():
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            reassignActs.append(reassignMenu.addAction(polymer))
        reassignActs.append(reassignMenu.addAction("other"))
        
        contextMenu.addMenu(combineMenu)        
        contextMenu.addMenu(reassignMenu)
        deleteAct = contextMenu.addAction("Delete Particle(s)")

        numParticles = len(self.selectedContours)
        if numParticles == 0:
            reassignMenu.setDisabled(True)
            combineMenu.setDisabled(True)
            deleteAct.setDisabled(True)
        elif numParticles == 1:
            combineMenu.setDisabled(True)


        action = contextMenu.exec_(event.screenPos())

        if action == deleteAct:
            print('deleting')
        elif action in combineActs:
            newAssignment = action.text()
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#            if newAssignment == "other":
#                QtWidgets.QMessageBox.about(self.parent, "Not yet implemented", "we are getting there...")
#                return
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            self.analysiswidget.editor.combineParticles(self.selectedContours, newAssignment)
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        elif action in reassignActs:
            newAssignment = action.text()
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#            if newAssignment == "other":
#                QtWidgets.QMessageBox.about(self.parent, "Not yet implemented", "we are getting there...")
#                return
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            self.analysiswidget.editor.reassignParticles(self.selectedContours, newAssignment)
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class FitPosIndicator(QtWidgets.QGraphicsItem):
    indicatorSize = 80
    def __init__(self, number, pos=(0,0)):
        super().__init__()
        self.setPos(pos[0], pos[1])
        self.number = number
        self.setAcceptedMouseButtons(QtCore.Qt.NoButton)
    
    def boundingRect(self):
        return QtCore.QRectF(-self.indicatorSize-1,-self.indicatorSize-1,
                             2*self.indicatorSize+2,2*self.indicatorSize+2)
    
    def paint(self, painter, option, widget):
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            painter.setPen(QtCore.Qt.green)
            painter.setBrush(QtGui.QColor(250,250,0,150))
            rect = QtCore.QRectF(-self.indicatorSize,-self.indicatorSize,
                                 2*self.indicatorSize,2*self.indicatorSize)
            font = painter.font()
            font.setPointSize(40)
            painter.setFont(font)
            painter.drawText(rect, QtCore.Qt.AlignCenter, str(self.number))
            painter.drawEllipse(rect)
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    def shape(self):
        path = QtGui.QPainterPath()
        path.addEllipse(self.boundingRect())
        return path

class RamanScanIndicator(QtWidgets.QGraphicsItem):
    def __init__(self, view, number, radius, pos=(0,0)):
        super().__init__()
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#        self.setFlag(QtWidgets.QGraphicsItem.ItemIsSelectable)
        self.setAcceptedMouseButtons(QtCore.Qt.NoButton)
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        self.view = view
        self.number = number
        self.radius = radius
        self.highlight = False
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        self.hidden = False
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        self.setPos(pos[0], pos[1])
        
    def setHighLight(self, highlight):
        if highlight!=self.highlight:
            self.highlight = highlight
            self.update()
    
    def boundingRect(self):
        return QtCore.QRectF(-self.radius-1,-self.radius-1,
                             2*self.radius+2,2*self.radius+2)
        
    def shape(self):
        path = QtGui.QPainterPath()
        path.addEllipse(self.boundingRect())
        return path
    
    def paint(self, painter, option, widget):
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        if not self.hidden:
            if self.highlight:
                painter.setPen(QtCore.Qt.red)
                painter.setBrush(QtGui.QColor(100,250,100,150))
            else:
                painter.setPen(QtCore.Qt.green)
                painter.setBrush(QtGui.QColor(50,50,250,150))
            rect = QtCore.QRectF(-self.radius, -self.radius, 2*self.radius, 2*self.radius)
            painter.drawEllipse(rect)
            font = painter.font()
            font.setPointSize(10)
            painter.setFont(font)
            painter.drawText(rect, QtCore.Qt.AlignCenter, str(self.number))
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#    def mousePressEvent(self, event):
#        p = event.pos()
#        x, y = p.x(), p.y()
#        r = np.sqrt(x**2+y**2)
#        if r<self.radius:
#            self.view.selectRamanScanPoint(self.number, r)
#        super().mouseReleaseEvent(event)
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class ScanIndicator(QtWidgets.QGraphicsItem):
    def __init__(self, number, wx, wy, pos=(0,0)):
        super().__init__()
        self.number = number
        self.wx = wx
        self.wy = wy
        self.setPos(pos[0], pos[1])
        self.setAcceptedMouseButtons(QtCore.Qt.NoButton)
    
    def boundingRect(self):
        return QtCore.QRectF(-self.wx/2-1,-self.wy/2-1,
                             self.wx+2,self.wy+2)
    
    def paint(self, painter, option, widget):
        painter.setPen(QtCore.Qt.blue)
        painter.setBrush(QtGui.QColor(0,0,250,80))
        rect = QtCore.QRectF(-self.wx/2, -self.wy/2, self.wx, self.wy)
        font = painter.font()
        font.setPointSize(40)
        painter.setFont(font)
        painter.drawText(rect, QtCore.Qt.AlignCenter, str(self.number))
        painter.drawRect(rect)
            
class Edge(QtWidgets.QGraphicsItem):
    
    def __init__(self, n1, n2):
        self.n1 = n1
        self.n2 = n2
        super().__init__()
        self.setPos(0, 0)
        n1.edges.append(self)
        n2.edges.append(self)
        self.setAcceptedMouseButtons(QtCore.Qt.NoButton)
    
    def boundingRect(self):
        return QtCore.QRectF(self.n1.pos(), self.n2.pos()).normalized().adjusted(-1,-1,1,1)
    
    def paint(self, painter, option, widget):
        painter.setPen(QtCore.Qt.green)
        painter.drawLine(self.n1.pos(), self.n2.pos()) 

class Node(QtWidgets.QGraphicsItem):
    def __init__(self, point, view):
        self.view = view
        self.point = point
        self.edges = []
        self.rectSize = 60
        super().__init__()
        self.setPos(self.point[0], self.point[1])
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        self.rectSize = 2*self.rectSize                #<--- why that? Why not set it to 120 right in the first place??
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        self.setFlag(QtWidgets.QGraphicsItem.ItemIsMovable)
        self.setFlag(QtWidgets.QGraphicsItem.ItemSendsGeometryChanges)
        self.setCacheMode(QtWidgets.QGraphicsItem.DeviceCoordinateCache)
        self.poschanged = False
        
    def boundingRect(self):
        return QtCore.QRectF(-self.rectSize-1,-self.rectSize-1,2*self.rectSize+2,2*self.rectSize+2)
        
    def shape(self):
        path = QtGui.QPainterPath()
        path.addEllipse(self.boundingRect())
        return path
    
    def paint(self, painter, option, widget):
        painter.setBrush(QtGui.QColor(255,0,0,80))
        painter.setPen(QtCore.Qt.red)
        painter.drawLine(0,-self.rectSize/2.,0,self.rectSize/2)
        painter.drawLine(-self.rectSize/2.,0,self.rectSize/2,0)
        rect = QtCore.QRectF(-self.rectSize,-self.rectSize,2*self.rectSize,2*self.rectSize)
        painter.drawEllipse(rect)        

    def itemChange(self, change, value):
        if change == QtWidgets.QGraphicsItem.ItemPositionHasChanged:
            for edge in self.edges:
                edge.prepareGeometryChange()
            self.poschanged = True

        return super(Node, self).itemChange(change, value)

    def mousePressEvent(self, event):
        self.poschanged = False
        super().mousePressEvent(event)

    def mouseReleaseEvent(self, event):
        if self.poschanged:
            self.view.resetScanPositions()
        super().mouseReleaseEvent(event)