Skip to content

GitLab

Commit 582761bd authored by JosefBrandt's avatar JosefBrandt
Browse files
Options

Modularization of analysisview, DocStrings

parent 07883df1
Show whitespace changes
Inline Side-by-side
Showing with 948 additions and 429 deletions
.gitignore
View file @ 582761bd
......@@ -10,3 +10,5 @@ analysis/database_config\.txt
*.c
external/build/
.idea/
__main__.py
View file @ 582761bd
......@@ -135,7 +135,7 @@ class GEPARDMainWindow(QtWidgets.QMainWindow):
self.openAct.setShortcut("Ctrl+O")
self.openAct.triggered.connect(self.open)
self.importAct = QtWidgets.QAction("&Import Project...", self)
self.importAct = QtWidgets.QAction("&Import Zeiss Project...", self)
self.importAct.setShortcut("Ctrl+I")
self.importAct.triggered.connect(self.importProject)
......
analysis/analysisplots.py
View file @ 582761bd
......@@ -23,9 +23,168 @@ from PyQt5 import QtWidgets, QtGui, QtCore
from matplotlib.backends.backend_qt5agg import FigureCanvasQTAgg as FigureCanvas
from matplotlib.figure import Figure
from matplotlib.backends.backend_qt5agg import NavigationToolbar2QT as NavigationToolbar
import numpy as np
from .colorlegend import getColorFromNameWithSeed
class ParticleIndicator(QtWidgets.QPushButton):
class SizeHistogramPlot(QtWidgets.QGroupBox):
def __init__(self, dataset):
super(SizeHistogramPlot, self).__init__()
self.dataset = dataset
self.minX = 3
self.maxX = 1E4
self.fontsize = 15
layout = QtWidgets.QHBoxLayout()
self.setLayout(layout)
self.sizeHistogramCanvas = FigureCanvas(Figure())
self.sizeHist_ax = self.sizeHistogramCanvas.figure.subplots()
self.sizeHist_ax.axis('off')
self.sizeHistogramCanvas.figure.subplots_adjust(left=0.1, top=0.93, bottom=0.15, right=0.995)
histNavigation = NavigationToolbar(self.sizeHistogramCanvas, self)
histNavigation.setOrientation(QtCore.Qt.Vertical)
histNavigation.setFixedWidth(50)
layout.addWidget(histNavigation)
layout.addWidget(self.sizeHistogramCanvas)
def drawHistograms(self, listOfHistograms):
if type(listOfHistograms) != list:
assert type(listOfHistograms) == SizeHistogramData
listOfHistograms = [listOfHistograms]
self.resetPlotFormat()
self.adjustPlotLimits(listOfHistograms)
for histData in listOfHistograms:
self.drawHistogram(histData)
self.drawLegend()
self.sizeHistogramCanvas.draw()
def resetPlotFormat(self):
self.sizeHist_ax.clear()
self.sizeHist_ax.axis('on')
self.sizeHist_ax.tick_params(axis='both', which='both', labelsize = self.fontsize)
self.sizeHist_ax.set_xlabel('Size (µm)', fontsize = self.fontsize)
self.sizeHist_ax.set_ylabel('Number', fontsize = self.fontsize)
self.sizeHist_ax.set_title('Size Distribution', fontsize=self.fontsize)
def adjustPlotLimits(self, listOfHistograms):
xmin, xmax = None, None
for histData in listOfHistograms:
if xmin is None:
xmin = np.clip(10**histData.minSizeExponent, self.minX, self.maxX)
xmax = np.clip(10**histData.maxSizeExponent, self.minX, self.maxX)
else:
currentXMin = np.clip(10**histData.minSizeExponent, self.minX, self.maxX)
currentXMax = np.clip(10**histData.maxSizeExponent, self.minX, self.maxX)
xmin = min(xmin, currentXMin)
xmax = max(xmax, currentXMax)
self.sizeHist_ax.set_xlim(xmin, xmax)
def drawHistogram(self, histData):
label = histData.label
x_values = histData.sizeHist_binCenters
y_values = histData.sizeHist_abundancies
color = getColorFromNameWithSeed(label, self.dataset.colorSeed, base255=False)
self.sizeHist_ax.semilogx(x_values, y_values, label=label, color=color)
def drawLegend(self):
self.sizeHist_ax.legend(prop = {'size': self.fontsize})
class SizeHistogramData(object):
def __init__(self, label, listOfSizes):
self.label = label
self.listOfSizes = listOfSizes
self.minSizeExponent = 0.1
self.maxSizeExponent = 3
self.numBins = 20
self.sizeHist_binCenters = None
self.sizeHist_abundancies = None
self.createSizeHistogramData()
def createSizeHistogramData(self):
assert self.listOfSizes is not None
bins = np.logspace(self.minSizeExponent, self.maxSizeExponent, self.numBins)
self.sizeHist_abundancies, binEdges = np.histogram(self.listOfSizes, bins)
self.sizeHist_binCenters = self.getBinCenters(binEdges)
def getBinCenters(self, binEdges):
binCenters = []
for i in range(self.numBins-1):
currentCenter = np.mean((binEdges[i], binEdges[i+1]))
binCenters.append(currentCenter)
return binCenters
class TypeHistogramPlot(QtWidgets.QScrollArea):
indexClicked = QtCore.pyqtSignal(int)
def __init__(self, dataset):
super(TypeHistogramPlot, self).__init__()
self.dataset = dataset
self.view = QtWidgets.QWidget(self)
self.view.setCursor(QtGui.QCursor(QtCore.Qt.WhatsThisCursor))
self.view.setMinimumWidth(250)
group = QtWidgets.QGroupBox('Polymer Type Distribution', self.view)
self.indicatorbox = QtWidgets.QVBoxLayout()
self.indicatorbox.setContentsMargins(5,5,5,5)
group.setLayout(self.indicatorbox)
hbox = QtWidgets.QHBoxLayout()
hbox.addWidget(group)
self.view.setLayout(hbox)
self.setWidgetResizable(True)
self.setWidget(self.view)
self.setAlignment(QtCore.Qt.AlignHCenter)
self.abundancyIndicators = []
def updateTypeHistogram(self, typeHistogram):
self.resetPlot()
colorList = []
abundancyList = []
labelList = []
for polymType in typeHistogram:
text = f'{typeHistogram[polymType]} x {polymType}'
labelList.append(text)
abundancyList.append(typeHistogram[polymType])
curColor = getColorFromNameWithSeed(polymType, self.dataset.colorSeed)
colorList.append(QtGui.QColor(*curColor))
types = list(zip(abundancyList, labelList, colorList))
numtotal= sum(abundancyList)
for index, entry in enumerate(types):
num, text, color = entry
indicator = AbundancyIndicator(num, numtotal, color, text)
self.indicatorbox.addWidget(indicator)
indicator.clicked.connect(self._getIndexFunction(index))
self.abundancyIndicators.append(indicator)
self.indicatorbox.addStretch()
self.view.update()
def resetPlot(self):
for indicator in self.abundancyIndicators:
self.indicatorbox.removeWidget(indicator)
indicator.setParent(None)
indicator.destroy()
self.indicatorbox.takeAt(0)
self.abundancyIndicators = []
def _getIndexFunction(self, index):
return lambda : self.indexClicked.emit(index)
class AbundancyIndicator(QtWidgets.QPushButton):
def __init__(self, number, numtotal, color, text, parent=None):
super().__init__(parent)
self.number = number
......@@ -61,54 +220,12 @@ class ParticleIndicator(QtWidgets.QPushButton):
qp.end()
class TypeHistogramView(QtWidgets.QScrollArea):
indexClicked = QtCore.pyqtSignal(int)
def __init__(self, parent=None):
super().__init__(parent)
self.view = QtWidgets.QWidget(self)
self.view.setCursor(QtGui.QCursor(QtCore.Qt.WhatsThisCursor))
self.view.setMinimumWidth(250)
group = QtWidgets.QGroupBox('Polymer Type Distribution', self.view)
self.indicatorbox = QtWidgets.QVBoxLayout()
self.indicatorbox.setContentsMargins(5,5,5,5)
group.setLayout(self.indicatorbox)
hbox = QtWidgets.QHBoxLayout()
hbox.addWidget(group)
self.view.setLayout(hbox)
self.setWidgetResizable(True)
self.setWidget(self.view)
self.setAlignment(QtCore.Qt.AlignHCenter)
self.widgets = []
def updateTypeHistogram(self, types):
for pi in self.widgets:
self.indicatorbox.removeWidget(pi)
pi.setParent(None)
pi.destroy()
self.indicatorbox.takeAt(0)
self.widgets = []
numtotal = sum([num for num, text, color in types])
def getIndexFunction(index):
return lambda : self.indexClicked.emit(index)
for index, entry in enumerate(types):
num, text, color = entry
pi = ParticleIndicator(num, numtotal, color, text)
self.indicatorbox.addWidget(pi)
pi.clicked.connect(getIndexFunction(index))
self.widgets.append(pi)
self.indicatorbox.addStretch()
self.view.update()
class SpectraPlot(QtWidgets.QGroupBox):
def __init__(self, dataset):
super(SpectraPlot, self).__init__()
self.dataset = dataset
self.spectra = None
self.fontsize = 15
layout = QtWidgets.QHBoxLayout()
self.canvas = FigureCanvas(Figure())
......@@ -131,14 +248,14 @@ class SpectraPlot(QtWidgets.QGroupBox):
#draw Sample Spectrum
self.spec_axis.axis("on")
self.spec_axis.clear()
self.spec_axis.tick_params(axis='both', which='both', labelsize=15)
self.spec_axis.set_xlabel('Wavenumber (cm-1)', fontsize = 15)
self.spec_axis.set_ylabel('Counts', fontsize = 15)
self.spec_axis.tick_params(axis='both', which='both', labelsize = self.fontsize)
self.spec_axis.set_xlabel('Wavenumber (cm-1)', fontsize = self.fontsize)
self.spec_axis.set_ylabel('Counts', fontsize = self.fontsize)
if self.spectra is not None:
specInfo = f'ScanPoint Number {specIndex+1}, with assignment {assignment} (hqi = {hqi})'
self.spec_axis.plot(self.spectra[:, 0], self.spectra[:, specIndex+1])
self.spec_axis.set_title(specInfo, fontsize=13)
self.spec_axis.set_title(specInfo, fontsize = self.fontsize)
self.spec_axis.set_xbound(100, (3400 if self.spectra[-1, 0] > 3400 else self.spectra[-1, 0]))
wavenumber_diff = list(self.spectra[:, 0]-100)
......@@ -152,13 +269,10 @@ class SpectraPlot(QtWidgets.QGroupBox):
def updateReferenceSpectrum(self, ref_wavenumber, ref_intensity):
#draw Reference
self.reference_axis.clear()
self.reference_axis.tick_params(axis='both', which='both', labelsize=15)
self.reference_axis.tick_params(axis='both', which='both', labelsize = self.fontsize)
self.reference_axis.plot(ref_wavenumber, ref_intensity, color = 'r')
self.reference_axis.set_ylabel('Ref. Intensity', fontsize = 15, color = 'r')
self.reference_axis.set_ylabel('Ref. Intensity', fontsize = self.fontsize, color = 'r')
self.reference_axis.tick_params('y', colors = 'r')
self.reference_axis.set_xbound(100, (3400 if self.spectra[-1, 0] > 3400 else self.spectra[-1, 0]))
self.canvas.draw()
\ No newline at end of file
\ No newline at end of file
analysis/analysisview.py
View file @ 582761bd
......@@ -21,19 +21,14 @@ If not, see <https://www.gnu.org/licenses/>.
"""
from PyQt5 import QtCore, QtGui, QtWidgets
import numpy as np
import sys
import time
from matplotlib.backends.backend_qt5agg import FigureCanvasQTAgg as FigureCanvas
from matplotlib.figure import Figure
from matplotlib.backends.backend_qt5agg import NavigationToolbar2QT as NavigationToolbar
from .excelexport import ExpExcelDialog
from .analysisplots import TypeHistogramView, SpectraPlot
from . import analysisplots
from . import analysiswidgets
from .loadresults import LoadTrueMatchResults
from .database import DataBaseWindow
from .colorlegend import getColorFromNameWithSeed
from .particleCharacterization import updateStatsOfParticlesIfNotManuallyEdited
try:
from .sqlexport import SQLExport
......@@ -56,33 +51,18 @@ class ParticleAnalysis(QtWidgets.QMainWindow):
self.particleContainer = dataset.particleContainer
self.importWindow = None
self.polymerCheckBoxes = []
self.lastSelectedCheckBoxNames = []
self.findcoloredParticlesWindow = None
self.currentParticleIndex = 0
self.currentSpectrumIndex = 0
self.typeHistogramPlot = TypeHistogramView(self)
self.sizeHistogramCanvas = FigureCanvas(Figure())
sizeHistGroup = QtWidgets.QGroupBox()
sizeHistLayout = QtWidgets.QHBoxLayout()
self.sizeHist_ax = self.sizeHistogramCanvas.figure.subplots()
self.sizeHist_ax.axis('off')
self.sizeHistogramCanvas.figure.subplots_adjust(left=0.1, top=0.93, bottom=0.15, right=0.995)
histNavigation = NavigationToolbar(self.sizeHistogramCanvas, self)
histNavigation.setOrientation(QtCore.Qt.Vertical)
histNavigation.setFixedWidth(50)
sizeHistLayout.addWidget(histNavigation)
sizeHistLayout.addWidget(self.sizeHistogramCanvas)
sizeHistGroup.setLayout(sizeHistLayout)
self.specPlot = SpectraPlot(self.dataset)
self.typeHistogramPlot = analysisplots.TypeHistogramPlot(self.dataset)
self.sizeHistogramPlot = analysisplots.SizeHistogramPlot(self.dataset)
self.specPlot = analysisplots.SpectraPlot(self.dataset)
splitter1 = QtWidgets.QSplitter(QtCore.Qt.Vertical)
splitter1.addWidget(self.specPlot)
splitter1.addWidget(sizeHistGroup)
splitter1.addWidget(self.sizeHistogramPlot)
splitter2 = QtWidgets.QSplitter(QtCore.Qt.Horizontal)
splitter2.addWidget(splitter1)
splitter2.addWidget(self.typeHistogramPlot)
......@@ -103,51 +83,13 @@ class ParticleAnalysis(QtWidgets.QMainWindow):
referenceLayout.addStretch()
referenceGroup.setLayout(referenceLayout)
self.navigationGroup = QtWidgets.QGroupBox('Navigate through polymers')
self.navigationGroup.setDisabled(True)
navigationLayout = QtWidgets.QHBoxLayout()
self.specNumberSelector = QtWidgets.QSpinBox()
self.specNumberSelector.setMinimumWidth(100)
self.specNumberSelector.setMinimum(1)
numSpectra = self.particleContainer.getNumberOfMeasurements()
self.specNumberSelector.setMaximum(numSpectra)
self.jumpToSpecBtn = QtWidgets.QPushButton('Jump To Spectrum of Number:')
self.jumpToSpecBtn.released.connect(self.jumpToIndicatedSpectrum)
self.typeSelectorCombo = QtWidgets.QComboBox()
self.typeSelectorCombo.setMinimumWidth(150)
self.typeSelectorCombo.currentIndexChanged.connect(self.setTypeSelector)
self.particleSelector = QtWidgets.QSpinBox()
self.particleSelector.valueChanged.connect(self.setParticleSelector)
self.particleNumberLabel = QtWidgets.QLabel('of xx particles; ')
self.spectrumSelector = QtWidgets.QSpinBox()
self.spectrumSelector.valueChanged.connect(self.setSpecSelector)
self.spectrumNumberLabel = QtWidgets.QLabel('of xx spectra')
for spinbox in [self.particleSelector, self.spectrumSelector]:
spinbox.setMinimum(1)
spinbox.setSingleStep(1)
spinbox.setValue(1)
navigationLayout.addWidget(self.jumpToSpecBtn)
navigationLayout.addWidget(self.specNumberSelector)
navigationLayout.addWidget(QtWidgets.QLabel('Select Polymer Type:'))
navigationLayout.addWidget(self.typeSelectorCombo)
navigationLayout.addStretch()
navigationLayout.addWidget(QtWidgets.QLabel('Select Particle'))
navigationLayout.addWidget(self.particleSelector)
navigationLayout.addWidget(self.particleNumberLabel)
navigationLayout.addStretch()
navigationLayout.addWidget(QtWidgets.QLabel('Select Spectrum'))
navigationLayout.addWidget(self.spectrumSelector)
navigationLayout.addWidget(self.spectrumNumberLabel)
self.navigationGroup.setLayout(navigationLayout)
self.navigationToolbar = analysiswidgets.PolymerNavigationToolbar(self.particleContainer)
self.navigationToolbar.WidgetsUpdated.connect(self.updateFromNavigationToolbar)
self.navigationToolbar.JumpToIndicatedSpec.connect(self.jumpToIndicatedSpectrum)
self.viewparent.ParticleOfIndexSelected.connect(self.navigationToolbar.setWidgetsToNewParticleIndex)
topLayout = QtWidgets.QHBoxLayout()
topLayout.addWidget(self.navigationGroup)
topLayout.addWidget(self.navigationToolbar)
topLayout.addWidget(referenceGroup)
viewLayout = QtWidgets.QVBoxLayout()
......@@ -175,29 +117,12 @@ class ParticleAnalysis(QtWidgets.QMainWindow):
self.optionsGroup.setLayout(optionsLayout)
self.optionsGroup.setMinimumWidth(175)
self.resultScrollarea = QtWidgets.QScrollArea(self)
self.resultScrollarea.setFixedWidth(250)
self.resultScrollarea.setWidgetResizable(True)
widget = QtWidgets.QWidget()
self.resultScrollarea.setWidget(widget)
self.layout_SArea = QtWidgets.QVBoxLayout(widget)
self.resultCheckBoxes = QtWidgets.QGroupBox('Display Polymer Types:')
self.resultCheckBoxesLayout = QtWidgets.QVBoxLayout()
self.showTotalSelector = QtWidgets.QCheckBox('Show Total Distribution')
self.showTotalSelector.setChecked(True)
self.showTotalSelector.setDisabled(True)
self.resultCheckBoxesLayout.addWidget(self.showTotalSelector)
self.resultCheckBoxesLayout.addStretch()
self.resultCheckBoxes.setLayout(self.resultCheckBoxesLayout)
self.layout_SArea.addWidget(self.resultCheckBoxes)
self.resultCheckBoxes = analysiswidgets.PolymerTypeCheckboxes()
self.resultCheckBoxes.PolymerCheckBoxToggled.connect(self.updatedPlotsAndContoursSelectively)
self.menuLayout = QtWidgets.QVBoxLayout()
self.menuLayout.addWidget(self.optionsGroup)
self.menuLayout.addWidget(self.resultScrollarea)
self.menuLayout.addWidget(self.resultCheckBoxes)
self.layout.addLayout(self.menuLayout)
self.layout.addLayout(viewLayout)
......@@ -205,10 +130,8 @@ class ParticleAnalysis(QtWidgets.QMainWindow):
self.createActions()
self.createMenus()
self.applyHQIThresholdToResults()
self.createHistogramData()
self.initializeSpecPlot()
self.setTypeSelector()
self.updateHistogramsAndContours()
self.navigationToolbar.updateWidgets()
def createActions(self):
self.loadTrueMatchAct = QtWidgets.QAction("Load &TrueMatch Results", self)
......@@ -217,9 +140,15 @@ class ParticleAnalysis(QtWidgets.QMainWindow):
self.loadSpectraAct = QtWidgets.QAction("Load &Spectra", self)
self.loadSpectraAct.triggered.connect(self.initializeSpecPlot)
self.databaseAct = QtWidgets.QAction("&ManageDatabase", self)
self.databaseAct = QtWidgets.QAction("&Manage reference spectra databases", self)
self.databaseAct.triggered.connect(self.launchDBManager)
self.findColorParticlesAct = QtWidgets.QAction("Navigate throuch &colored, not unknown particles", self)
self.findColorParticlesAct.triggered.connect(self.launchColoredParticleWindow)
self.recalculateParticleStatsAct = QtWidgets.QAction("&Recalculated particle stats", self)
self.recalculateParticleStatsAct.triggered.connect(self.recalculateParticleStats)
self.expExcelAct= QtWidgets.QAction("Export &Excel List", self)
self.expExcelAct.setDisabled(True)
self.expExcelAct.triggered.connect(self.exportToExcel)
......@@ -231,6 +160,10 @@ class ParticleAnalysis(QtWidgets.QMainWindow):
self.getAndActivateActionsFromGepardMain()
def getAndActivateActionsFromGepardMain(self):
"""
For user convenience, the actions from the Gepard main window are also added to the menubar of the analysis window.
:return:
"""
gepard = self.viewparent.imparent
self.noOverlayAct = gepard.noOverlayAct
......@@ -241,7 +174,7 @@ class ParticleAnalysis(QtWidgets.QMainWindow):
self.transpAct.triggered.connect(self.updateContourColors)
self.hideLabelAct = gepard.hideLabelAct
self.hideLabelAct.triggered.connect(self.show_hide_labels)
self.hideLabelAct.triggered.connect(self.showOrHideSpecNumbers)
self.darkenAct = gepard.darkenAct
self.darkenAct.triggered.connect(self.darkenBackground)
......@@ -264,7 +197,7 @@ class ParticleAnalysis(QtWidgets.QMainWindow):
self.overlayActGroup = QtWidgets.QActionGroup(self.dispMenu)
self.overlayActGroup.setExclusive(True)
self.overlayActGroup.triggered.connect(self.updateContourColors)
self.overlayActGroup.triggered.connect(self.updateHistogramsAndContours)
self.overlayActGroup.triggered.connect(self.updatePlotsAndContours)
for act in [self.noOverlayAct, self.selOverlayAct, self.fullOverlayAct]:
self.dispMenu.addAction(act)
......@@ -275,6 +208,8 @@ class ParticleAnalysis(QtWidgets.QMainWindow):
self.toolMenu = QtWidgets.QMenu("&Tools")
self.toolMenu.addAction(self.databaseAct)
self.toolMenu.addAction(self.findColorParticlesAct)
self.toolMenu.addAction(self.recalculateParticleStatsAct)
self.exportMenu = QtWidgets.QMenu("&Export", self)
self.exportMenu.addAction(self.expExcelAct)
......@@ -285,16 +220,48 @@ class ParticleAnalysis(QtWidgets.QMainWindow):
self.menuBar().addMenu(self.toolMenu)
self.menuBar().addMenu(self.exportMenu)
def keyPressEvent(self, event):
if event.key() in [QtCore.Qt.Key_Return, QtCore.Qt.Key_Enter]:
self.jumpToIndicatedSpectrum()
def launchDBManager(self):
"""
The Database Manager is launched for editing and creating databases with reference spectra
:return:
"""
if self.dbWin.isHidden():
self.dbWin.show()
def launchColoredParticleWindow(self):
"""
Likely just a temporary function to find colored particles, as the color classification is still not perfect.
The module finds not unknown particles that were assigned to a color and the user can confirm or change the respective colors.
:return:
"""
if self.findcoloredParticlesWindow is not None:
del self.findcoloredParticlesWindow
self.findcoloredParticlesWindow = analysiswidgets.FindColoredParticleWindow(self)
self.findcoloredParticlesWindow.ParticleOfIndexSelected.connect(self.navigationToolbar.setWidgetsToNewParticleIndex)
def recalculateParticleStats(self):
"""
recalculate all particle colors, if not already manually set
"""
self.setDisabled(True)
self.viewparent.blockUI()
reply = QtWidgets.QMessageBox.question(self, 'Recalculate stats',
"Do you want recalculate stats of all particles?\nThis might take a while..",
QtWidgets.QMessageBox.Yes |
QtWidgets.QMessageBox.No, QtWidgets.QMessageBox.No)
if reply == QtWidgets.QMessageBox.Yes:
updateStatsOfParticlesIfNotManuallyEdited(self.particleContainer)
self.updatedPlotsAndContoursSelectively()
QtWidgets.QMessageBox.about(self, 'Done', 'Recalculation is finished')
self.viewparent.unblockUI()
self.setDisabled(False)
def populateRefSelector(self):
#delete all present entries:
"""
The Combobox for selecting references is updated to the currently selected database
:return:
"""
self.refSelector.clear()
if self.dbWin.activeDatabase is None:
......@@ -312,144 +279,79 @@ class ParticleAnalysis(QtWidgets.QMainWindow):
@QtCore.pyqtSlot()
def applyHQIThresholdToResults(self):
"""
The in the hqiSpinBox indicated value is applied to all spectra in the dataset.
All plots are updated, as the assignment of each particle can have changed.
:return:
"""
hqi = self.hqiSpinBox.value()
self.particleContainer.applyHQITresholdToParticles(hqi)
self.dataset.resultParams['minHQI'] = hqi
self.dataset.save()
self.createHistogramData()
self.updateHistogramsAndContours()
def updateHistogramsAndContours(self):
self.createHistogramData()
t0 = time.time()
self.updateWidgetContents()
self.updatePlotsAndContours()
def updatePlotsAndContours(self):
"""
All plots are updated, the colors of the contourItems in the sampleview are updated
:return:
"""
self.updateTypeHistogram()
print('update type hist: {} ms'.format(round((time.time()-t0)*1000)))
t0 = time.time()
self.updateSizeHistogram()
print('update size hist: {} ms'.format(round((time.time()-t0)*1000)))
t0 = time.time()
self.updateContourColors()
print('update contours: {} ms'.format(round((time.time()-t0)*1000)))
t0 = time.time()
self.updateLegend()
print('update legend: {} ms'.format(round((time.time()-t0)*1000)))
self.dataset.save()
def createHistogramData(self):
self.lastSelectedCheckBoxNames = self.getSelectedPolymers()
###Handle Checkboxes for all polymers...
self.menuLayout.removeWidget(self.resultScrollarea)
for i in [self.resultCheckBoxes, self.resultCheckBoxesLayout, self.resultScrollarea, self.layout_SArea]:
i.setParent(None)
del i
for i in self.polymerCheckBoxes: #remove present boxlabels
i.setParent(None)