GitLab

Sorry, forgot that in the prev. commit...

plus some bugfixes 

 - Proper cancellation of optical- or raman scan..
 - Fixed showing/hiding widgets when switching between optical scan and particle detection

With simulated stage and camera

Adds an interface for recalculating coordinate system of a dataset. Is found in toolbar of mainWindow: tools->Recalculate Coordinate System

Should not be online, until approved by Thermo Fischer

Rotation contributions of transformation matrix were neglected, they are now properly taken into account.

-fixed: incorrect line heights in z-levels selector component in optical scan, when in-/decreasing z-levels to many/low amounts

-fixed: when zooming in and clicking somewhere in MainWindow DetectionView sometimes does not show the correct image segment

-fixed: in OpticalScan mode the scenePyramid was called twice to update the scene after each successful scan of one stack of (scan)tiles
 * this may have lead to buffer overflows and null pointer exceptions (in qt5 and cv2) on Win10

-some additional logging
-fixed some index confusions (cell/pixel indexing in cv2 vs numpy) in ScenePyramid

This messes up the progress bar....
Also: more complete blockUI and unblockUI

A new parameter allows setting a maximum size of connected Components. Larger components are scaled down accordingly to avoid MemoryErrors.

A progress bar is implemented for visualizing the detection progress.
The progress bar is put in a dedicated class (in uielements.py) and it is now also used by opticalscan and ramanscanui.