GitLab

With simulated stage and camera

Adds an interface for recalculating coordinate system of a dataset. Is found in toolbar of mainWindow: tools->Recalculate Coordinate System

-some additional logging
-fixed some index confusions (cell/pixel indexing in cv2 vs numpy) in ScenePyramid

Color mode is fixed (bgr2rgb not needed),
More hotkeys,
Preparation for Renishaw interface (handles raman measurement differently),
"Measure fraction of particles" now keeps all particles, but measures only a fraction of them,
Better Navigation in Analysisview (button press responses)

IMPORTANT: start Gepard by: "python -m gepard" outside of the module directory

Have it managed by the particle!

Added the following features:
In optical scan: BackgroundManager for subtraction of background images
In segmentation: CLAHE and multiple thresholding

Contours are working and can be selected

Basic plots working, proceeding to contours

AnotherStepOfRefactoringDone

First phase of refactoring

new logpath handling; Qt AppLocalDataLocation is now used to obtain an OS independent standard path for such information; since this path is needed multiple times it is shared as parameter to all relevant modules and processes

several bugfixes

Initial commit of current project status. Some modification will be needed before this will work without manual adaptations…