GitLab

 - Proper cancellation of optical- or raman scan..
 - Fixed showing/hiding widgets when switching between optical scan and particle detection

With simulated stage and camera

-fixed: in OpticalScan mode the scenePyramid was called twice to update the scene after each successful scan of one stack of (scan)tiles
 * this may have lead to buffer overflows and null pointer exceptions (in qt5 and cv2) on Win10

-some additional logging
-fixed some index confusions (cell/pixel indexing in cv2 vs numpy) in ScenePyramid

A new parameter allows setting a maximum size of connected Components. Larger components are scaled down accordingly to avoid MemoryErrors.

A progress bar is implemented for visualizing the detection progress.
The progress bar is put in a dedicated class (in uielements.py) and it is now also used by opticalscan and ramanscanui.

-fixes tiles not being generated if full image is only slightly bigger than a multiple of tile size and scanned images not reaching into all tiles, so full image would not be fully covered by tiles

-original loadAndPastImage() function inserted again, renamed to legacyLoadAndPasteImage(), bc. it is still used by some components
-while scanning images will be saved in folder scanimages. these will now be deleted automatically
-fixed error in ScenePyramid::addSrcTile() when scanned images are spanning more than two tiles in either direction

Linearspace, logspce or completely customized

Color mode is fixed (bgr2rgb not needed),
More hotkeys,
Preparation for Renishaw interface (handles raman measurement differently),
"Measure fraction of particles" now keeps all particles, but measures only a fraction of them,
Better Navigation in Analysisview (button press responses)

IMPORTANT: start Gepard by: "python -m gepard" outside of the module directory

Added the following features:
In optical scan: BackgroundManager for subtraction of background images
In segmentation: CLAHE and multiple thresholding

AnotherStepOfRefactoringDone

First phase of refactoring

new logpath handling; Qt AppLocalDataLocation is now used to obtain an OS independent standard path for such information; since this path is needed multiple times it is shared as parameter to all relevant modules and processes

several bugfixes

reworking of simulated raman interface to work with smaller data
ramancontrol now works with a config file to switch interfaces and default path

Initial commit of current project status. Some modification will be needed before this will work without manual adaptations…