GEPARD issueshttps://gitlab.ipfdd.de/GEPARD/gepard/-/issues2022-12-05T11:22:15Zhttps://gitlab.ipfdd.de/GEPARD/gepard/-/issues/4ParticleScout Measurements in Premerge2022-12-05T11:22:15ZMareike SchumacherParticleScout Measurements in PremergeErrors ocurred with Premerge latest commit: 1653e62ea910d3011c5afe2bc5f6f462f79273ad
Main question: Does Pre-Merge_T2D_Feature_ReImpl branche solve problems described in issue #2?
PSc = Particle Scout
TLDR:
- problems persist analyzing Particle Scout measurements
( 1 ) analyzing corrupted .pkl files from issue #2 in GEPARDEval - Pre-Merge_T2D_Feature_ReImpl FAIL
( 2 ) importing PSc into GEPARD - Pre-Merge_T2D_Feature_ReImpl to create new .pkl FAIL
( 3 ) creating new .pkl in GEPARD - T2D; analysis in GEPARDEval - Pre-Merge_T2D_Feature_ReImpl FAIL
Detailed description:
(1) corrupted .pkl files from issue#2
DATA = F12A2_kaputt @ nextcloud
Fehler:
Traceback (most recent call last):
File "C:\Users\schumacher\gepard-Pre-Merge_T2D_Feature_ReImpl\gepard\analysis\particleEditor.py", line 239, in paintParticles
img, xmin, ymin, self.padding = pc.contoursToImg(contours, padding=0)
File "C:\Users\schumacher\gepard-Pre-Merge_T2D_Feature_ReImpl\gepard\analysis\particleCharacterization.py", line 397, in contoursToImg
img = combineImagePatches(img)
File "C:\Users\schumacher\gepard-Pre-Merge_T2D_Feature_ReImpl\gepard\analysis\particleCharacterization.py", line 525, in combineImagePatches
raise NotConnectedContoursError
gepard.errors.NotConnectedContoursError
(2) Pre-Merge_T2D_Feature_ReImpl import of Psc measurement
DATA = F12_A2_PSc_Pre-Merge_T2D_Feature_ReImpl _Import @ nextcloud
- particle detection was checked using different parameters
- created .pkl shows two threshold bars regulating HQI (Pic1)
- for some particles spectra are already summed up (Pic2), although not even same polymer type
- after paint mode, focus jumps to unrelated spot on filter
- zoom on particles after toggle particle navigation WORKS, but with very high magnification (Pic3)
(3) new T2D import, analysis with Pre-Merge_T2D_Feature_ReImpl GEPARDEval
DATA = F12_A2_PSc_T2D_Import @ nextcloud
- new import is created in T2D
- .pkl is opened in GEPARDEval Pre-Merge_T2D_Feature_ReImpl
- no TrueMatch File can be loaded no Error, "DATA loaded" appears, but no spectra is designated
- []_TrueMatchResults.txt files checked and compared to others: no unknown delimiters or different structure
![Pic1_HQI_Threshold](/uploads/27ff75b6aaac9f9896d4725b4143f4c7/Pic1_HQI_Threshold.png)
![Pic2_Spectra_Summed_Up](/uploads/a1680e1e37cd649136ac7f367e271e27/Pic2_Spectra_Summed_Up.png)
![Pic3_Particle_Navigation_Zoom](/uploads/0284d6b3c9fe0bb39210cb93cea61363/Pic3_Particle_Navigation_Zoom.png)
Proposed solution for zoom on particles: Do not choose a zoom bigger than size that corresponds to scalebar = 100 µmErrors ocurred with Premerge latest commit: 1653e62ea910d3011c5afe2bc5f6f462f79273ad
Main question: Does Pre-Merge_T2D_Feature_ReImpl branche solve problems described in issue #2?
PSc = Particle Scout
TLDR:
- problems persist analyzing Particle Scout measurements
( 1 ) analyzing corrupted .pkl files from issue #2 in GEPARDEval - Pre-Merge_T2D_Feature_ReImpl FAIL
( 2 ) importing PSc into GEPARD - Pre-Merge_T2D_Feature_ReImpl to create new .pkl FAIL
( 3 ) creating new .pkl in GEPARD - T2D; analysis in GEPARDEval - Pre-Merge_T2D_Feature_ReImpl FAIL
Detailed description:
(1) corrupted .pkl files from issue#2
DATA = F12A2_kaputt @ nextcloud
Fehler:
Traceback (most recent call last):
File "C:\Users\schumacher\gepard-Pre-Merge_T2D_Feature_ReImpl\gepard\analysis\particleEditor.py", line 239, in paintParticles
img, xmin, ymin, self.padding = pc.contoursToImg(contours, padding=0)
File "C:\Users\schumacher\gepard-Pre-Merge_T2D_Feature_ReImpl\gepard\analysis\particleCharacterization.py", line 397, in contoursToImg
img = combineImagePatches(img)
File "C:\Users\schumacher\gepard-Pre-Merge_T2D_Feature_ReImpl\gepard\analysis\particleCharacterization.py", line 525, in combineImagePatches
raise NotConnectedContoursError
gepard.errors.NotConnectedContoursError
(2) Pre-Merge_T2D_Feature_ReImpl import of Psc measurement
DATA = F12_A2_PSc_Pre-Merge_T2D_Feature_ReImpl _Import @ nextcloud
- particle detection was checked using different parameters
- created .pkl shows two threshold bars regulating HQI (Pic1)
- for some particles spectra are already summed up (Pic2), although not even same polymer type
- after paint mode, focus jumps to unrelated spot on filter
- zoom on particles after toggle particle navigation WORKS, but with very high magnification (Pic3)
(3) new T2D import, analysis with Pre-Merge_T2D_Feature_ReImpl GEPARDEval
DATA = F12_A2_PSc_T2D_Import @ nextcloud
- new import is created in T2D
- .pkl is opened in GEPARDEval Pre-Merge_T2D_Feature_ReImpl
- no TrueMatch File can be loaded no Error, "DATA loaded" appears, but no spectra is designated
- []_TrueMatchResults.txt files checked and compared to others: no unknown delimiters or different structure
![Pic1_HQI_Threshold](/uploads/27ff75b6aaac9f9896d4725b4143f4c7/Pic1_HQI_Threshold.png)
![Pic2_Spectra_Summed_Up](/uploads/a1680e1e37cd649136ac7f367e271e27/Pic2_Spectra_Summed_Up.png)
![Pic3_Particle_Navigation_Zoom](/uploads/0284d6b3c9fe0bb39210cb93cea61363/Pic3_Particle_Navigation_Zoom.png)
Proposed solution for zoom on particles: Do not choose a zoom bigger than size that corresponds to scalebar = 100 µmRobertRobert