ParticleScout Measurements in Premerge
Errors ocurred with Premerge latest commit: 1653e62e Main question: Does Pre-Merge_T2D_Feature_ReImpl branche solve problems described in issue #2 (closed)?
PSc = Particle Scout
TLDR:
- problems persist analyzing Particle Scout measurements
( 1 ) analyzing corrupted .pkl files from issue #2 (closed) in GEPARDEval - Pre-Merge_T2D_Feature_ReImpl FAIL
( 2 ) importing PSc into GEPARD - Pre-Merge_T2D_Feature_ReImpl to create new .pkl FAIL
( 3 ) creating new .pkl in GEPARD - T2D; analysis in GEPARDEval - Pre-Merge_T2D_Feature_ReImpl FAIL
Detailed description:
(1) corrupted .pkl files from issue#2 DATA = F12A2_kaputt @ nextcloud Fehler: Traceback (most recent call last): File "C:\Users\schumacher\gepard-Pre-Merge_T2D_Feature_ReImpl\gepard\analysis\particleEditor.py", line 239, in paintParticles img, xmin, ymin, self.padding = pc.contoursToImg(contours, padding=0) File "C:\Users\schumacher\gepard-Pre-Merge_T2D_Feature_ReImpl\gepard\analysis\particleCharacterization.py", line 397, in contoursToImg img = combineImagePatches(img) File "C:\Users\schumacher\gepard-Pre-Merge_T2D_Feature_ReImpl\gepard\analysis\particleCharacterization.py", line 525, in combineImagePatches raise NotConnectedContoursError gepard.errors.NotConnectedContoursError
(2) Pre-Merge_T2D_Feature_ReImpl import of Psc measurement DATA = F12_A2_PSc_Pre-Merge_T2D_Feature_ReImpl _Import @ nextcloud
- particle detection was checked using different parameters
- created .pkl shows two threshold bars regulating HQI (Pic1)
- for some particles spectra are already summed up (Pic2), although not even same polymer type
- after paint mode, focus jumps to unrelated spot on filter
- zoom on particles after toggle particle navigation WORKS, but with very high magnification (Pic3)
(3) new T2D import, analysis with Pre-Merge_T2D_Feature_ReImpl GEPARDEval DATA = F12_A2_PSc_T2D_Import @ nextcloud
- new import is created in T2D
- .pkl is opened in GEPARDEval Pre-Merge_T2D_Feature_ReImpl
- no TrueMatch File can be loaded no Error, "DATA loaded" appears, but no spectra is designated
- []_TrueMatchResults.txt files checked and compared to others: no unknown delimiters or different structure
Proposed solution for zoom on particles: Do not choose a zoom bigger than size that corresponds to scalebar = 100 µm